STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA58530.1Hypothetical protein; No homology to any previously reported sequences. (526 aa)    
Predicted Functional Partners:
ALA57671.1
Putative Type IV pilus biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.962
ALA59754.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.900
ALA58532.1
Putative General secretion pathway protein K; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.858
ALA57672.1
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.846
gspF
General secretion pathway protein F.
 
 
 
 0.822
ALA58531.1
Hypothetical protein; No homology to any previously reported sequences.
       0.822
ALA57674.1
Putative Type IV pili biogenesis protein PilQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.800
gspE-2
Type II secretion system protein E; Function of strongly homologous gene; transporter.
 
 
 
 0.783
ALA60163.1
Pilin (modular protein).
 
   
 0.779
pilC
Type IV pilus biogenesis protein PilC.
 
 
 
 0.765
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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