STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgJPutative hydrolase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (242 aa)    
Predicted Functional Partners:
ybgK
Putative hydrolase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.999
ybgL
Putative lactam utilization protein, UPF0271 family; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.998
ALA58627.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
ALA58628.1
Exported protein of unknown function; No homology to any previously reported sequences.
       0.773
ALA58623.1
Putative Copper-containing oxidoreductase signal peptide protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.548
ALA58629.1
Hypothetical protein; No homology to any previously reported sequences.
       0.503
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.