STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APOBApolipoprotein B. (4416 aa)    
Predicted Functional Partners:
MTTP
Microsomal triglyceride transfer protein.
   
 0.997
APOE
Apolipoprotein E.
   
 0.993
LIPC
Lipase C, hepatic type.
   
 0.985
VLDLR
Very low density lipoprotein receptor.
    
 0.967
LDLRAP1
Low density lipoprotein receptor adaptor protein 1.
     
 0.958
OLR1
Oxidized low density lipoprotein receptor 1.
     
 0.958
LPL
Lipoprotein lipase.
     
 0.957
ENSSARP00000000498
annotation not available
   
 
 0.951
APOM
Apolipoprotein M.
   
 
 0.951
ENSSARP00000008073
annotation not available
   
 
 0.948
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.