ENSSARP00000000039 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSARP00000000039

annotation not available (1063 aa)

Predicted Functional Partners:

MYO3A

0.801

MYO3B

0.801

MYO6

0.794

ENSSARP00000000125

0.725

MYO9A

0.725

EFCAB3

0.698

CALM2

0.698

ENSSARP00000003259

0.630

BAZ1B

0.630

ENSSARP00000005281

0.615

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAZ1B	ENSSARP00000000039	ENSSARP00000004752	ENSSARP00000000039	Bromodomain adjacent to zinc finger domain 1B.	annotation not available	0.630
BAZ1B	ENSSARP00000003259	ENSSARP00000004752	ENSSARP00000003259	Bromodomain adjacent to zinc finger domain 1B.	annotation not available	0.920
CALM2	EFCAB3	ENSSARP00000007914	ENSSARP00000000548	Calmodulin 2.	EF-hand calcium binding domain 3.	0.530
CALM2	ENSSARP00000000039	ENSSARP00000007914	ENSSARP00000000039	Calmodulin 2.	annotation not available	0.698
CALM2	ENSSARP00000000125	ENSSARP00000007914	ENSSARP00000000125	Calmodulin 2.	annotation not available	0.635
CALM2	MYO3A	ENSSARP00000007914	ENSSARP00000004603	Calmodulin 2.	Myosin IIIA.	0.709
CALM2	MYO3B	ENSSARP00000007914	ENSSARP00000009640	Calmodulin 2.	Myosin IIIB.	0.709
CALM2	MYO6	ENSSARP00000007914	ENSSARP00000009744	Calmodulin 2.	Myosin VI.	0.909
CALM2	MYO9A	ENSSARP00000007914	ENSSARP00000002863	Calmodulin 2.	Myosin IXA.	0.626
EFCAB3	CALM2	ENSSARP00000000548	ENSSARP00000007914	EF-hand calcium binding domain 3.	Calmodulin 2.	0.530
EFCAB3	ENSSARP00000000039	ENSSARP00000000548	ENSSARP00000000039	EF-hand calcium binding domain 3.	annotation not available	0.698
EFCAB3	ENSSARP00000000125	ENSSARP00000000548	ENSSARP00000000125	EF-hand calcium binding domain 3.	annotation not available	0.620
EFCAB3	MYO3A	ENSSARP00000000548	ENSSARP00000004603	EF-hand calcium binding domain 3.	Myosin IIIA.	0.709
EFCAB3	MYO3B	ENSSARP00000000548	ENSSARP00000009640	EF-hand calcium binding domain 3.	Myosin IIIB.	0.709
EFCAB3	MYO6	ENSSARP00000000548	ENSSARP00000009744	EF-hand calcium binding domain 3.	Myosin VI.	0.908
EFCAB3	MYO9A	ENSSARP00000000548	ENSSARP00000002863	EF-hand calcium binding domain 3.	Myosin IXA.	0.620
ENSSARP00000000039	BAZ1B	ENSSARP00000000039	ENSSARP00000004752	annotation not available	Bromodomain adjacent to zinc finger domain 1B.	0.630
ENSSARP00000000039	CALM2	ENSSARP00000000039	ENSSARP00000007914	annotation not available	Calmodulin 2.	0.698
ENSSARP00000000039	EFCAB3	ENSSARP00000000039	ENSSARP00000000548	annotation not available	EF-hand calcium binding domain 3.	0.698
ENSSARP00000000039	ENSSARP00000000125	ENSSARP00000000039	ENSSARP00000000125	annotation not available	annotation not available	0.725