Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF7Ring finger protein 7. (112 aa)    
Predicted Functional Partners:
CUL5
Cullin 5.
    
 0.998
ENSSARP00000005386
annotation not available
   
 0.998
ARIH2
Ariadne RBR E3 ubiquitin protein ligase 2.
    
 0.993
ASB7
Ankyrin repeat and SOCS box containing 7.
    
 0.984
UBE2M
Ubiquitin conjugating enzyme E2 M.
   
 0.984
RAB40B
RAB40B, member RAS oncogene family.
    
 0.984
ASB11
Ankyrin repeat and SOCS box containing 11.
    
 0.982
NEDD8
NEDD8 ubiquitin like modifier.
   
 0.981
UBXN7
UBX domain protein 7.
    
 0.981
UBE2S
Ubiquitin conjugating enzyme E2 S.
    
 0.977
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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