STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP19Ubiquitin specific peptidase 19. (1315 aa)    
Predicted Functional Partners:
RNF123
Ring finger protein 123.
   
 0.977
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 0.949
USP7
Ubiquitin specific peptidase 7.
   
 
 0.830
BIRC3
Baculoviral IAP repeat containing 3.
    
 0.809
BIRC2
Baculoviral IAP repeat containing 2.
    
 0.809
USP13
Ubiquitin specific peptidase 13.
    
 
 0.783
USP14
Ubiquitin specific peptidase 14.
    
 
 0.692
ENSSARP00000004064
annotation not available
    
 
 0.690
ENSSARP00000009038
annotation not available
    
 
 0.676
ZFAND4
Zinc finger AN1-type containing 4.
   
 0.668
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.