STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC23ASec23 homolog A, coat complex II component. (765 aa)    
Predicted Functional Partners:
SEC31A
SEC31 homolog A, COPII coat complex component.
   
 0.999
ENSSARP00000001982
annotation not available
   
0.999
SEC24D
SEC24 homolog D, COPII coat complex component.
   
0.999
SEC24A
SEC24 homolog A, COPII coat complex component.
   
 0.994
ENSSARP00000012572
annotation not available
   
 0.993
SEC31B
SEC31 homolog B, COPII coat complex component.
   
 0.990
SAR1A
Secretion associated Ras related GTPase 1A.
    
 0.985
SAR1B
Secretion associated Ras related GTPase 1B.
    
 0.985
ENSSARP00000010773
annotation not available
   
 0.966
PEF1
penta-EF-hand domain containing 1.
    
 0.936
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.