STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMPOThymopoietin. (585 aa)    
Predicted Functional Partners:
LMNA
Lamin A/C.
   
 0.911
BANF1
Barrier to autointegration factor 1.
    
 0.854
LBR
Lamin B receptor.
   
 
 0.767
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.754
LMNB1
Lamin B1.
   
 0.726
KIF20B
Kinesin family member 20B.
   
 0.693
G2E3
G2/M-phase specific E3 ubiquitin protein ligase.
    
 0.678
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.676
CKAP5
Cytoskeleton associated protein 5.
   
 0.673
ARID4A
AT-rich interaction domain 4A.
    
 0.670
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.