STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMPOThymopoietin. (585 aa)    
Predicted Functional Partners:
LMNA
Lamin A/C.
   
 0.981
BANF1
Barrier to autointegration factor 1.
    
 0.974
LMNB1
Lamin B1.
   
 0.968
USP7
Ubiquitin specific peptidase 7.
    
  0.948
LEMD3
LEM domain containing 3.
   
 0.889
ENSSARP00000001154
annotation not available
    
 0.867
ANLN
Anillin actin binding protein.
   
 
 0.856
CANX
Calnexin.
    
 
 0.844
NUP133
Nucleoporin 133.
    
 0.842
RRBP1
Ribosome binding protein 1.
    
  0.819
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.