Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBRG1Transforming growth factor beta regulator 1. (357 aa)    
Predicted Functional Partners:
KDM6A
Lysine demethylase 6A.
   
 0.896
KDM6B
Lysine demethylase 6B.
   
 0.896
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.853
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.839
ENSSARP00000009309
annotation not available
    
 0.797
ENSSARP00000010672
annotation not available
    
  0.795
PAGR1
PAXIP1 associated glutamate rich protein 1.
    
 0.754
COPS2
COP9 signalosome subunit 2.
   
  
 0.752
ENSSARP00000005058
annotation not available
   
 0.713
KNTC1
Kinetochore associated 1.
      
 0.689
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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