TMCC1 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TMCC1

Transmembrane and coiled-coil domain family 1. (653 aa)

Predicted Functional Partners:

TMCC3

0.854

ENSSARP00000004587

0.802

ENSSARP00000007549

0.682

ENSSARP00000008746

0.618

ENSSARP00000000250

0.594

DSTYK

0.516

ENSSARP00000004844

0.487

LRIG3

0.472

ENSSARP00000010801

0.472

ENSSARP00000011373

0.468

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSTYK	TMCC1	ENSSARP00000004651	ENSSARP00000001059	Dual serine/threonine and tyrosine protein kinase.	Transmembrane and coiled-coil domain family 1.	0.516
ENSSARP00000000250	TMCC1	ENSSARP00000000250	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.594
ENSSARP00000004587	ENSSARP00000007549	ENSSARP00000004587	ENSSARP00000007549	annotation not available	annotation not available	0.684
ENSSARP00000004587	TMCC1	ENSSARP00000004587	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.802
ENSSARP00000004844	TMCC1	ENSSARP00000004844	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.487
ENSSARP00000007549	ENSSARP00000004587	ENSSARP00000007549	ENSSARP00000004587	annotation not available	annotation not available	0.684
ENSSARP00000007549	TMCC1	ENSSARP00000007549	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.682
ENSSARP00000008746	ENSSARP00000010801	ENSSARP00000008746	ENSSARP00000010801	annotation not available	annotation not available	0.584
ENSSARP00000008746	TMCC1	ENSSARP00000008746	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.618
ENSSARP00000010801	ENSSARP00000008746	ENSSARP00000010801	ENSSARP00000008746	annotation not available	annotation not available	0.584
ENSSARP00000010801	TMCC1	ENSSARP00000010801	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.472
ENSSARP00000011373	TMCC1	ENSSARP00000011373	ENSSARP00000001059	annotation not available	Transmembrane and coiled-coil domain family 1.	0.468
LRIG3	TMCC1	ENSSARP00000007206	ENSSARP00000001059	Leucine rich repeats and immunoglobulin like domains 3.	Transmembrane and coiled-coil domain family 1.	0.472
TMCC1	DSTYK	ENSSARP00000001059	ENSSARP00000004651	Transmembrane and coiled-coil domain family 1.	Dual serine/threonine and tyrosine protein kinase.	0.516
TMCC1	ENSSARP00000000250	ENSSARP00000001059	ENSSARP00000000250	Transmembrane and coiled-coil domain family 1.	annotation not available	0.594
TMCC1	ENSSARP00000004587	ENSSARP00000001059	ENSSARP00000004587	Transmembrane and coiled-coil domain family 1.	annotation not available	0.802
TMCC1	ENSSARP00000004844	ENSSARP00000001059	ENSSARP00000004844	Transmembrane and coiled-coil domain family 1.	annotation not available	0.487
TMCC1	ENSSARP00000007549	ENSSARP00000001059	ENSSARP00000007549	Transmembrane and coiled-coil domain family 1.	annotation not available	0.682
TMCC1	ENSSARP00000008746	ENSSARP00000001059	ENSSARP00000008746	Transmembrane and coiled-coil domain family 1.	annotation not available	0.618
TMCC1	ENSSARP00000010801	ENSSARP00000001059	ENSSARP00000010801	Transmembrane and coiled-coil domain family 1.	annotation not available	0.472