GDAP1 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GDAP1

Ganglioside induced differentiation associated protein 1. (319 aa)

Predicted Functional Partners:

UNC5C

0.894

PLTP

0.879

ENSSARP00000012622

0.879

ENSSARP00000000677

0.874

ENSSARP00000009082

0.864

ENSSARP00000007766

0.816

ACBD5

0.811

ENSSARP00000005960

0.790

PXMP4

0.730

ABCD3

0.711

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD3	ACBD5	ENSSARP00000009975	ENSSARP00000006045	ATP binding cassette subfamily D member 3.	acyl-CoA binding domain containing 5.	0.767
ABCD3	ENSSARP00000005960	ENSSARP00000009975	ENSSARP00000005960	ATP binding cassette subfamily D member 3.	annotation not available	0.835
ABCD3	ENSSARP00000007766	ENSSARP00000009975	ENSSARP00000007766	ATP binding cassette subfamily D member 3.	annotation not available	0.868
ABCD3	ENSSARP00000009082	ENSSARP00000009975	ENSSARP00000009082	ATP binding cassette subfamily D member 3.	annotation not available	0.991
ABCD3	ENSSARP00000012622	ENSSARP00000009975	ENSSARP00000012622	ATP binding cassette subfamily D member 3.	annotation not available	0.789
ABCD3	GDAP1	ENSSARP00000009975	ENSSARP00000001060	ATP binding cassette subfamily D member 3.	Ganglioside induced differentiation associated protein 1.	0.711
ABCD3	PXMP4	ENSSARP00000009975	ENSSARP00000006796	ATP binding cassette subfamily D member 3.	Peroxisomal membrane protein 4.	0.680
ACBD5	ABCD3	ENSSARP00000006045	ENSSARP00000009975	acyl-CoA binding domain containing 5.	ATP binding cassette subfamily D member 3.	0.767
ACBD5	ENSSARP00000005960	ENSSARP00000006045	ENSSARP00000005960	acyl-CoA binding domain containing 5.	annotation not available	0.708
ACBD5	ENSSARP00000007766	ENSSARP00000006045	ENSSARP00000007766	acyl-CoA binding domain containing 5.	annotation not available	0.752
ACBD5	ENSSARP00000009082	ENSSARP00000006045	ENSSARP00000009082	acyl-CoA binding domain containing 5.	annotation not available	0.756
ACBD5	ENSSARP00000012622	ENSSARP00000006045	ENSSARP00000012622	acyl-CoA binding domain containing 5.	annotation not available	0.759
ACBD5	GDAP1	ENSSARP00000006045	ENSSARP00000001060	acyl-CoA binding domain containing 5.	Ganglioside induced differentiation associated protein 1.	0.811
ACBD5	PLTP	ENSSARP00000006045	ENSSARP00000002771	acyl-CoA binding domain containing 5.	Phospholipid transfer protein.	0.426
ACBD5	PXMP4	ENSSARP00000006045	ENSSARP00000006796	acyl-CoA binding domain containing 5.	Peroxisomal membrane protein 4.	0.750
ENSSARP00000000677	GDAP1	ENSSARP00000000677	ENSSARP00000001060	annotation not available	Ganglioside induced differentiation associated protein 1.	0.874
ENSSARP00000005960	ABCD3	ENSSARP00000005960	ENSSARP00000009975	annotation not available	ATP binding cassette subfamily D member 3.	0.835
ENSSARP00000005960	ACBD5	ENSSARP00000005960	ENSSARP00000006045	annotation not available	acyl-CoA binding domain containing 5.	0.708
ENSSARP00000005960	ENSSARP00000007766	ENSSARP00000005960	ENSSARP00000007766	annotation not available	annotation not available	0.893
ENSSARP00000005960	ENSSARP00000009082	ENSSARP00000005960	ENSSARP00000009082	annotation not available	annotation not available	0.878