Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PPM1LProtein phosphatase, Mg2+/Mn2+ dependent 1L. (314 aa)    
Predicted Functional Partners:
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.939
DBT
Dihydrolipoamide branched chain transacylase E2.
   
 0.939
ENSSARP00000012922
annotation not available
  
 0.922
ENSSARP00000006823
annotation not available
   
 0.885
ACBD3
acyl-CoA binding domain containing 3.
   
  
 0.880
LRRC34
Leucine rich repeat containing 34.
   
 0.754
MED31
Mediator complex subunit 31.
    
  0.750
ENSSARP00000010347
annotation not available
    
  0.744
ENSSARP00000012517
annotation not available
    
  0.744
ENSSARP00000011302
annotation not available
    
 0.742
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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