STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPM1LProtein phosphatase, Mg2+/Mn2+ dependent 1L. (314 aa)    
Predicted Functional Partners:
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.877
DBT
Dihydrolipoamide branched chain transacylase E2.
   
 0.815
ENSSARP00000012922
annotation not available
  
 0.814
ENSSARP00000011302
annotation not available
    
 0.788
ENSSARP00000012621
annotation not available
    
 0.788
SMC4
Structural maintenance of chromosomes 4.
  
  
 0.712
MCF2L2
MCF.2 cell line derived transforming sequence-like 2.
    
 
 0.708
MED31
Mediator complex subunit 31.
    
  0.700
ENSSARP00000010347
annotation not available
    
  0.696
ENSSARP00000012517
annotation not available
    
  0.696
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.