NUP160 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NUP160

Nucleoporin 160. (1127 aa)

Predicted Functional Partners:

NUP107

0.999

NUP133

0.999

NUP85

0.999

AHCTF1

0.998

NUP37

0.998

NUP98

0.998

NUP43

0.998

ENSSARP00000012898

0.998

SEH1L

0.997

NUP155

0.994

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHCTF1	ENSSARP00000012898	ENSSARP00000000781	ENSSARP00000012898	AT-hook containing transcription factor 1.	annotation not available	0.920
AHCTF1	NUP107	ENSSARP00000000781	ENSSARP00000000894	AT-hook containing transcription factor 1.	Nucleoporin 107.	0.998
AHCTF1	NUP133	ENSSARP00000000781	ENSSARP00000002285	AT-hook containing transcription factor 1.	Nucleoporin 133.	0.999
AHCTF1	NUP155	ENSSARP00000000781	ENSSARP00000004627	AT-hook containing transcription factor 1.	Nucleoporin 155.	0.973
AHCTF1	NUP160	ENSSARP00000000781	ENSSARP00000001068	AT-hook containing transcription factor 1.	Nucleoporin 160.	0.998
AHCTF1	NUP37	ENSSARP00000000781	ENSSARP00000003457	AT-hook containing transcription factor 1.	Nucleoporin 37.	0.998
AHCTF1	NUP43	ENSSARP00000000781	ENSSARP00000008611	AT-hook containing transcription factor 1.	Nucleoporin 43.	0.997
AHCTF1	NUP85	ENSSARP00000000781	ENSSARP00000007282	AT-hook containing transcription factor 1.	Nucleoporin 85.	0.997
AHCTF1	NUP98	ENSSARP00000000781	ENSSARP00000008483	AT-hook containing transcription factor 1.	Nucleoporin 98.	0.997
AHCTF1	SEH1L	ENSSARP00000000781	ENSSARP00000000334	AT-hook containing transcription factor 1.	SEH1 like nucleoporin.	0.997
ENSSARP00000012898	AHCTF1	ENSSARP00000012898	ENSSARP00000000781	annotation not available	AT-hook containing transcription factor 1.	0.920
ENSSARP00000012898	NUP107	ENSSARP00000012898	ENSSARP00000000894	annotation not available	Nucleoporin 107.	0.997
ENSSARP00000012898	NUP133	ENSSARP00000012898	ENSSARP00000002285	annotation not available	Nucleoporin 133.	0.997
ENSSARP00000012898	NUP155	ENSSARP00000012898	ENSSARP00000004627	annotation not available	Nucleoporin 155.	0.999
ENSSARP00000012898	NUP160	ENSSARP00000012898	ENSSARP00000001068	annotation not available	Nucleoporin 160.	0.998
ENSSARP00000012898	NUP37	ENSSARP00000012898	ENSSARP00000003457	annotation not available	Nucleoporin 37.	0.921
ENSSARP00000012898	NUP43	ENSSARP00000012898	ENSSARP00000008611	annotation not available	Nucleoporin 43.	0.992
ENSSARP00000012898	NUP85	ENSSARP00000012898	ENSSARP00000007282	annotation not available	Nucleoporin 85.	0.995
ENSSARP00000012898	NUP98	ENSSARP00000012898	ENSSARP00000008483	annotation not available	Nucleoporin 98.	0.990
ENSSARP00000012898	SEH1L	ENSSARP00000012898	ENSSARP00000000334	annotation not available	SEH1 like nucleoporin.	0.981