STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPS5HPS5 biogenesis of lysosomal organelles complex 2 subunit 2. (1127 aa)    
Predicted Functional Partners:
HPS3
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1.
   
 0.998
BLOC1S6
Biogenesis of lysosomal organelles complex 1 subunit 6.
     
 0.970
WASHC4
WASH complex subunit 4.
   
 
  0.930
STX12
Syntaxin 12.
     
 0.923
SNAP25
Synaptosome associated protein 25.
     
  0.921
ENSSARP00000012139
annotation not available
     
 0.913
LOC101539215
SNARE-associated protein Snapin.
     
 0.913
ENSSARP00000009276
annotation not available
     
  0.881
PI4K2B
Phosphatidylinositol 4-kinase type 2 beta.
     
  0.855
STX7
Syntaxin 7.
     
 0.849
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.