STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF11Ring finger protein 11. (154 aa)    
Predicted Functional Partners:
LOC101558621
Ubiquitin-conjugating enzyme E2 N-like.
    
 0.934
ITCH
Itchy E3 ubiquitin protein ligase.
    
 
 0.919
TAX1BP1
Tax1 binding protein 1.
   
 
 0.883
SSBP2
Single stranded DNA binding protein 2.
   
    0.867
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 
 0.817
TNFAIP3
TNF alpha induced protein 3.
   
 
 0.776
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.751
WWP1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.724
ENSSARP00000004100
annotation not available
    
 0.723
HBP1
HMG-box transcription factor 1.
      
 0.716
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.