Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VAMP8Vesicle associated membrane protein 8. (98 aa)    
Predicted Functional Partners:
SNAP23
Synaptosome associated protein 23.
   
 0.999
STX8
Syntaxin 8.
    
 0.999
STX7
Syntaxin 7.
    
 0.999
STX4
Syntaxin 4.
    
 0.998
ENSSARP00000004934
annotation not available
    
 0.998
STX12
Syntaxin 12.
    
 0.998
SNAP29
Synaptosome associated protein 29.
   
 0.998
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.997
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.996
ENSSARP00000011921
annotation not available
   
 0.996
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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