RBSN protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBSN

Rabenosyn, RAB effector. (776 aa)

Predicted Functional Partners:

VPS45

0.998

ENSSARP00000010533

0.995

RAB5B

0.991

RAB22A

0.973

RAB5A

0.970

ENSSARP00000009427

0.959

ENSSARP00000004780

0.958

ENSSARP00000003258

0.953

STAM

0.923

ENSSARP00000008790

0.920

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000003258	ENSSARP00000004780	ENSSARP00000003258	ENSSARP00000004780	annotation not available	annotation not available	0.555
ENSSARP00000003258	ENSSARP00000008790	ENSSARP00000003258	ENSSARP00000008790	annotation not available	annotation not available	0.407
ENSSARP00000003258	RAB22A	ENSSARP00000003258	ENSSARP00000006368	annotation not available	RAB22A, member RAS oncogene family.	0.407
ENSSARP00000003258	RAB5A	ENSSARP00000003258	ENSSARP00000002437	annotation not available	RAB5A, member RAS oncogene family.	0.555
ENSSARP00000003258	RAB5B	ENSSARP00000003258	ENSSARP00000005636	annotation not available	RAB5B, member RAS oncogene family.	0.597
ENSSARP00000003258	RBSN	ENSSARP00000003258	ENSSARP00000001126	annotation not available	Rabenosyn, RAB effector.	0.953
ENSSARP00000003258	VPS45	ENSSARP00000003258	ENSSARP00000007657	annotation not available	Vacuolar protein sorting 45 homolog.	0.626
ENSSARP00000004780	ENSSARP00000003258	ENSSARP00000004780	ENSSARP00000003258	annotation not available	annotation not available	0.555
ENSSARP00000004780	ENSSARP00000009427	ENSSARP00000004780	ENSSARP00000009427	annotation not available	annotation not available	0.681
ENSSARP00000004780	ENSSARP00000010533	ENSSARP00000004780	ENSSARP00000010533	annotation not available	annotation not available	0.555
ENSSARP00000004780	RBSN	ENSSARP00000004780	ENSSARP00000001126	annotation not available	Rabenosyn, RAB effector.	0.958
ENSSARP00000004780	STAM	ENSSARP00000004780	ENSSARP00000004598	annotation not available	Signal transducing adaptor molecule.	0.543
ENSSARP00000004780	VPS45	ENSSARP00000004780	ENSSARP00000007657	annotation not available	Vacuolar protein sorting 45 homolog.	0.877
ENSSARP00000008790	ENSSARP00000003258	ENSSARP00000008790	ENSSARP00000003258	annotation not available	annotation not available	0.407
ENSSARP00000008790	ENSSARP00000009427	ENSSARP00000008790	ENSSARP00000009427	annotation not available	annotation not available	0.899
ENSSARP00000008790	ENSSARP00000010533	ENSSARP00000008790	ENSSARP00000010533	annotation not available	annotation not available	0.407
ENSSARP00000008790	RAB22A	ENSSARP00000008790	ENSSARP00000006368	annotation not available	RAB22A, member RAS oncogene family.	0.967
ENSSARP00000008790	RAB5A	ENSSARP00000008790	ENSSARP00000002437	annotation not available	RAB5A, member RAS oncogene family.	0.423
ENSSARP00000008790	RAB5B	ENSSARP00000008790	ENSSARP00000005636	annotation not available	RAB5B, member RAS oncogene family.	0.642
ENSSARP00000008790	RBSN	ENSSARP00000008790	ENSSARP00000001126	annotation not available	Rabenosyn, RAB effector.	0.920