Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATG4BAutophagy related 4B cysteine peptidase. (370 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.999
ENSSARP00000000417
annotation not available
   
 0.998
ENSSARP00000010704
annotation not available
   
 0.996
ENSSARP00000010127
annotation not available
   
 0.991
ENSSARP00000008265
annotation not available
   
 0.962
ATG3
Autophagy related 3.
   
 
 0.961
ATG4D
Autophagy related 4D cysteine peptidase.
    
0.957
ATG4A
Autophagy related 4A cysteine peptidase.
  
 
 
0.928
ENSSARP00000005763
annotation not available
   
 
 0.913
ENSSARP00000005378
annotation not available
   
 
 0.902
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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