SNAP23 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

SNAP23

Synaptosome associated protein 23. (211 aa)

Predicted Functional Partners:

ENSSARP00000000628

0.999

VAMP8

0.999

STX4

0.999

STX7

0.998

VAMP7

0.998

ENSSARP00000007107

0.998

STX12

0.998

ENSSARP00000011666

0.998

ENSSARP00000011921

0.995

ENSSARP00000000084

0.988

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000000084	ENSSARP00000000628	ENSSARP00000000084	ENSSARP00000000628	annotation not available	annotation not available	0.993
ENSSARP00000000084	ENSSARP00000007107	ENSSARP00000000084	ENSSARP00000007107	annotation not available	annotation not available	0.855
ENSSARP00000000084	ENSSARP00000011921	ENSSARP00000000084	ENSSARP00000011921	annotation not available	annotation not available	0.981
ENSSARP00000000084	SNAP23	ENSSARP00000000084	ENSSARP00000001138	annotation not available	Synaptosome associated protein 23.	0.988
ENSSARP00000000084	STX12	ENSSARP00000000084	ENSSARP00000011220	annotation not available	Syntaxin 12.	0.952
ENSSARP00000000084	STX4	ENSSARP00000000084	ENSSARP00000003638	annotation not available	Syntaxin 4.	0.899
ENSSARP00000000084	STX7	ENSSARP00000000084	ENSSARP00000002367	annotation not available	Syntaxin 7.	0.952
ENSSARP00000000084	VAMP7	ENSSARP00000000084	ENSSARP00000004215	annotation not available	Vesicle associated membrane protein 7.	0.982
ENSSARP00000000084	VAMP8	ENSSARP00000000084	ENSSARP00000001125	annotation not available	Vesicle associated membrane protein 8.	0.963
ENSSARP00000000628	ENSSARP00000000084	ENSSARP00000000628	ENSSARP00000000084	annotation not available	annotation not available	0.993
ENSSARP00000000628	ENSSARP00000007107	ENSSARP00000000628	ENSSARP00000007107	annotation not available	annotation not available	0.985
ENSSARP00000000628	ENSSARP00000011666	ENSSARP00000000628	ENSSARP00000011666	annotation not available	annotation not available	0.999
ENSSARP00000000628	ENSSARP00000011921	ENSSARP00000000628	ENSSARP00000011921	annotation not available	annotation not available	0.995
ENSSARP00000000628	SNAP23	ENSSARP00000000628	ENSSARP00000001138	annotation not available	Synaptosome associated protein 23.	0.999
ENSSARP00000000628	STX12	ENSSARP00000000628	ENSSARP00000011220	annotation not available	Syntaxin 12.	0.990
ENSSARP00000000628	STX4	ENSSARP00000000628	ENSSARP00000003638	annotation not available	Syntaxin 4.	0.999
ENSSARP00000000628	STX7	ENSSARP00000000628	ENSSARP00000002367	annotation not available	Syntaxin 7.	0.995
ENSSARP00000000628	VAMP7	ENSSARP00000000628	ENSSARP00000004215	annotation not available	Vesicle associated membrane protein 7.	0.975
ENSSARP00000000628	VAMP8	ENSSARP00000000628	ENSSARP00000001125	annotation not available	Vesicle associated membrane protein 8.	0.954
ENSSARP00000007107	ENSSARP00000000084	ENSSARP00000007107	ENSSARP00000000084	annotation not available	annotation not available	0.855