Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTC39ATetratricopeptide repeat domain 39A. (573 aa)    
Predicted Functional Partners:
ENSSARP00000004116
annotation not available
   
  
 0.636
ENSSARP00000006717
annotation not available
      
 0.622
CMTR1
Cap methyltransferase 1.
      
 0.621
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
      
 0.583
GRIA4
Glutamate ionotropic receptor AMPA type subunit 4.
      
 0.550
ST6GALNAC4
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4.
      
 0.510
ENSSARP00000002179
annotation not available
      
 0.509
RPL6
Ribosomal protein L6.
      
 0.506
ENSSARP00000011302
annotation not available
    
   0.472
ENSSARP00000012621
annotation not available
    
   0.472
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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