TUBA8 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TUBA8

Tubulin alpha 8. (276 aa)

Predicted Functional Partners:

ZC3H8

0.896

ENSSARP00000006823

0.871

ENSSARP00000001609

0.864

UBAC2

0.827

ERLIN2

0.823

TUBB6

0.795

ENSSARP00000002382

0.793

TUBB2A

0.793

TUBB1

0.793

ENSSARP00000012795

0.793

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000001609	ENSSARP00000002382	ENSSARP00000001609	ENSSARP00000002382	annotation not available	annotation not available	0.838
ENSSARP00000001609	ENSSARP00000006823	ENSSARP00000001609	ENSSARP00000006823	annotation not available	annotation not available	0.903
ENSSARP00000001609	TUBA8	ENSSARP00000001609	ENSSARP00000001216	annotation not available	Tubulin alpha 8.	0.864
ENSSARP00000001609	TUBB6	ENSSARP00000001609	ENSSARP00000009000	annotation not available	Tubulin beta 6 class V.	0.936
ENSSARP00000002382	ENSSARP00000001609	ENSSARP00000002382	ENSSARP00000001609	annotation not available	annotation not available	0.838
ENSSARP00000002382	ENSSARP00000006823	ENSSARP00000002382	ENSSARP00000006823	annotation not available	annotation not available	0.961
ENSSARP00000002382	ENSSARP00000012795	ENSSARP00000002382	ENSSARP00000012795	annotation not available	annotation not available	0.823
ENSSARP00000002382	TUBA8	ENSSARP00000002382	ENSSARP00000001216	annotation not available	Tubulin alpha 8.	0.793
ENSSARP00000002382	TUBB1	ENSSARP00000002382	ENSSARP00000004143	annotation not available	Tubulin beta 1 class VI.	0.813
ENSSARP00000002382	TUBB2A	ENSSARP00000002382	ENSSARP00000003095	annotation not available	Tubulin beta chain-like.	0.813
ENSSARP00000002382	TUBB6	ENSSARP00000002382	ENSSARP00000009000	annotation not available	Tubulin beta 6 class V.	0.813
ENSSARP00000006823	ENSSARP00000001609	ENSSARP00000006823	ENSSARP00000001609	annotation not available	annotation not available	0.903
ENSSARP00000006823	ENSSARP00000002382	ENSSARP00000006823	ENSSARP00000002382	annotation not available	annotation not available	0.961
ENSSARP00000006823	ENSSARP00000012795	ENSSARP00000006823	ENSSARP00000012795	annotation not available	annotation not available	0.881
ENSSARP00000006823	TUBA8	ENSSARP00000006823	ENSSARP00000001216	annotation not available	Tubulin alpha 8.	0.871
ENSSARP00000006823	TUBB1	ENSSARP00000006823	ENSSARP00000004143	annotation not available	Tubulin beta 1 class VI.	0.881
ENSSARP00000006823	TUBB2A	ENSSARP00000006823	ENSSARP00000003095	annotation not available	Tubulin beta chain-like.	0.881
ENSSARP00000006823	TUBB6	ENSSARP00000006823	ENSSARP00000009000	annotation not available	Tubulin beta 6 class V.	0.893
ENSSARP00000012795	ENSSARP00000002382	ENSSARP00000012795	ENSSARP00000002382	annotation not available	annotation not available	0.823
ENSSARP00000012795	ENSSARP00000006823	ENSSARP00000012795	ENSSARP00000006823	annotation not available	annotation not available	0.881