Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM3AFamily with sequence similarity 3 member A. (186 aa)    
Predicted Functional Partners:
CCDC22
Coiled-coil domain containing 22.
      
 0.847
RXYLT1
Ribitol xylosyltransferase 1.
    
 0.722
ENSSARP00000011358
annotation not available
      
 0.676
B3GALNT2
beta-1,3-N-acetylgalactosaminyltransferase 2.
    
 
 0.611
FKTN
Fukutin.
    
 0.568
ENSSARP00000006097
annotation not available
     
 0.562
STIM1
Stromal interaction molecule 1.
      
 0.493
KARS1
lysyl-tRNA synthetase 1.
      
 0.485
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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