Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (903 aa)    
Predicted Functional Partners:
AMFR
Autocrine motility factor receptor.
    
 0.984
ENSSARP00000006181
annotation not available
    
 0.981
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.968
SQLE
Squalene epoxidase.
    
 
 0.967
ENSSARP00000002264
annotation not available
    
 
 0.957
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.942
VCP
Valosin containing protein.
    
 0.906
RNF145
Ring finger protein 145.
    
 0.894
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.885
ENSSARP00000009611
annotation not available
    
 0.885
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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