ENSSARP00000001324 protein (Sorex araneus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSSARP00000001324

annotation not available (609 aa)

Predicted Functional Partners:

PUS1

0.872

SARS1

0.850

ENSSARP00000011056

0.829

NSUN6

0.786

ENSSARP00000003689

0.769

ENSSARP00000008410

0.769

METTL1

0.768

ENSSARP00000000221

0.744

EPRS1

0.709

DDX56

0.705

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX56	ENSSARP00000000221	ENSSARP00000012996	ENSSARP00000000221	DEAD-box helicase 56.	annotation not available	0.826
DDX56	ENSSARP00000001324	ENSSARP00000012996	ENSSARP00000001324	DEAD-box helicase 56.	annotation not available	0.705
DDX56	ENSSARP00000003689	ENSSARP00000012996	ENSSARP00000003689	DEAD-box helicase 56.	annotation not available	0.647
DDX56	ENSSARP00000008410	ENSSARP00000012996	ENSSARP00000008410	DEAD-box helicase 56.	annotation not available	0.647
DDX56	ENSSARP00000011056	ENSSARP00000012996	ENSSARP00000011056	DEAD-box helicase 56.	annotation not available	0.959
DDX56	EPRS1	ENSSARP00000012996	ENSSARP00000011081	DEAD-box helicase 56.	glutamyl-prolyl-tRNA synthetase 1.	0.512
DDX56	METTL1	ENSSARP00000012996	ENSSARP00000010253	DEAD-box helicase 56.	Methyltransferase like 1.	0.793
DDX56	NSUN6	ENSSARP00000012996	ENSSARP00000012281	DEAD-box helicase 56.	NOP2/Sun RNA methyltransferase 6.	0.964
DDX56	PUS1	ENSSARP00000012996	ENSSARP00000007557	DEAD-box helicase 56.	Pseudouridine synthase 1.	0.682
ENSSARP00000000221	DDX56	ENSSARP00000000221	ENSSARP00000012996	annotation not available	DEAD-box helicase 56.	0.826
ENSSARP00000000221	ENSSARP00000001324	ENSSARP00000000221	ENSSARP00000001324	annotation not available	annotation not available	0.744
ENSSARP00000000221	ENSSARP00000003689	ENSSARP00000000221	ENSSARP00000003689	annotation not available	annotation not available	0.787
ENSSARP00000000221	ENSSARP00000008410	ENSSARP00000000221	ENSSARP00000008410	annotation not available	annotation not available	0.749
ENSSARP00000000221	ENSSARP00000011056	ENSSARP00000000221	ENSSARP00000011056	annotation not available	annotation not available	0.865
ENSSARP00000000221	METTL1	ENSSARP00000000221	ENSSARP00000010253	annotation not available	Methyltransferase like 1.	0.992
ENSSARP00000000221	NSUN6	ENSSARP00000000221	ENSSARP00000012281	annotation not available	NOP2/Sun RNA methyltransferase 6.	0.682
ENSSARP00000000221	PUS1	ENSSARP00000000221	ENSSARP00000007557	annotation not available	Pseudouridine synthase 1.	0.739
ENSSARP00000001324	DDX56	ENSSARP00000001324	ENSSARP00000012996	annotation not available	DEAD-box helicase 56.	0.705
ENSSARP00000001324	ENSSARP00000000221	ENSSARP00000001324	ENSSARP00000000221	annotation not available	annotation not available	0.744
ENSSARP00000001324	ENSSARP00000003689	ENSSARP00000001324	ENSSARP00000003689	annotation not available	annotation not available	0.769