STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE2Synapse defective Rho GTPase homolog 2. (1065 aa)    
Predicted Functional Partners:
RASL11B
RAS like family 11 member B.
    
 0.889
ENSSARP00000007708
annotation not available
    
 0.796
ERC1
ELKS/RAB6-interacting/CAST family member 1.
    
 
 0.729
ERC2
ELKS/RAB6-interacting/CAST family member 2.
    
 
 0.729
ELP4
Elongator acetyltransferase complex subunit 4.
      
 0.677
PPP4R3A
Protein phosphatase 4 regulatory subunit 3A.
    
 
 0.672
RAC1
Rac family small GTPase 1.
    
 0.659
ENSSARP00000000125
annotation not available
    
 0.649
MYO9A
Myosin IXA.
    
 0.649
LYN
LYN proto-oncogene, Src family tyrosine kinase.
    
 0.649
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.