Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TNFAIP8TNF alpha induced protein 8. (190 aa)    
Predicted Functional Partners:
MED4
Mediator complex subunit 4.
    
   0.629
LATS1
Large tumor suppressor kinase 1.
    
   0.628
CCNDBP1
Cyclin D1 binding protein 1.
      
 0.618
ENSSARP00000007921
annotation not available
      
 0.617
C4orf45
Chromosome 4 open reading frame 45.
      
 0.617
TINAGL1
Tubulointerstitial nephritis antigen like 1.
      
 0.600
DNAJC1
DnaJ heat shock protein family (Hsp40) member C1.
      
 0.573
RIC8A
RIC8 guanine nucleotide exchange factor A.
      
 0.572
CSNK2A2
Casein kinase 2 alpha 2.
      
 0.479
ENSSARP00000012624
annotation not available
      
 0.472
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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