RPS5 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPS5

Ribosomal protein S5. (204 aa)

Predicted Functional Partners:

ENSSARP00000000092

0.999

ENSSARP00000000158

0.999

ENSSARP00000000656

0.999

RPS16

0.999

RPS8

0.999

RPS7

0.999

UBA52

0.999

ENSSARP00000001020

0.999

ENSSARP00000001322

0.999

RPL35

0.999

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000000092	ENSSARP00000000158	ENSSARP00000000092	ENSSARP00000000158	annotation not available	annotation not available	0.997
ENSSARP00000000092	ENSSARP00000000656	ENSSARP00000000092	ENSSARP00000000656	annotation not available	annotation not available	0.999
ENSSARP00000000092	ENSSARP00000001020	ENSSARP00000000092	ENSSARP00000001020	annotation not available	annotation not available	0.994
ENSSARP00000000092	ENSSARP00000001322	ENSSARP00000000092	ENSSARP00000001322	annotation not available	annotation not available	0.997
ENSSARP00000000092	RPL35	ENSSARP00000000092	ENSSARP00000001447	annotation not available	Ribosomal protein L35.	0.992
ENSSARP00000000092	RPS16	ENSSARP00000000092	ENSSARP00000000789	annotation not available	Ribosomal protein S16.	0.999
ENSSARP00000000092	RPS5	ENSSARP00000000092	ENSSARP00000001366	annotation not available	Ribosomal protein S5.	0.999
ENSSARP00000000092	RPS7	ENSSARP00000000092	ENSSARP00000000876	annotation not available	Ribosomal protein S7.	0.999
ENSSARP00000000092	RPS8	ENSSARP00000000092	ENSSARP00000000823	annotation not available	Ribosomal protein S8.	0.999
ENSSARP00000000092	UBA52	ENSSARP00000000092	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.997
ENSSARP00000000158	ENSSARP00000000092	ENSSARP00000000158	ENSSARP00000000092	annotation not available	annotation not available	0.997
ENSSARP00000000158	ENSSARP00000000656	ENSSARP00000000158	ENSSARP00000000656	annotation not available	annotation not available	0.999
ENSSARP00000000158	ENSSARP00000001020	ENSSARP00000000158	ENSSARP00000001020	annotation not available	annotation not available	0.999
ENSSARP00000000158	ENSSARP00000001322	ENSSARP00000000158	ENSSARP00000001322	annotation not available	annotation not available	0.999
ENSSARP00000000158	RPL35	ENSSARP00000000158	ENSSARP00000001447	annotation not available	Ribosomal protein L35.	0.999
ENSSARP00000000158	RPS16	ENSSARP00000000158	ENSSARP00000000789	annotation not available	Ribosomal protein S16.	0.999
ENSSARP00000000158	RPS5	ENSSARP00000000158	ENSSARP00000001366	annotation not available	Ribosomal protein S5.	0.999
ENSSARP00000000158	RPS7	ENSSARP00000000158	ENSSARP00000000876	annotation not available	Ribosomal protein S7.	0.999
ENSSARP00000000158	RPS8	ENSSARP00000000158	ENSSARP00000000823	annotation not available	Ribosomal protein S8.	0.999
ENSSARP00000000158	UBA52	ENSSARP00000000158	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999