ENSSARP00000001472 protein (Sorex araneus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSSARP00000001472

annotation not available (113 aa)

Predicted Functional Partners:

VPREB1

0.760

ENSSARP00000003659

0.729

TRAV19

0.705

ENSSARP00000009385

0.685

JCHAIN

0.659

ENSSARP00000001038

0.626

ENSSARP00000007959

0.622

ENSSARP00000001490

0.597

NTNG1

0.528

ENSSARP00000000538

0.513

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000000538	ENSSARP00000001472	ENSSARP00000000538	ENSSARP00000001472	annotation not available	annotation not available	0.513
ENSSARP00000000538	VPREB1	ENSSARP00000000538	ENSSARP00000011051	annotation not available	V-set pre-B cell surrogate light chain 1.	0.576
ENSSARP00000001038	ENSSARP00000001472	ENSSARP00000001038	ENSSARP00000001472	annotation not available	annotation not available	0.626
ENSSARP00000001038	ENSSARP00000007959	ENSSARP00000001038	ENSSARP00000007959	annotation not available	annotation not available	0.999
ENSSARP00000001038	JCHAIN	ENSSARP00000001038	ENSSARP00000007260	annotation not available	Joining chain of multimeric IgA and IgM.	0.962
ENSSARP00000001038	TRAV19	ENSSARP00000001038	ENSSARP00000011425	annotation not available	T cell receptor alpha variable 19.	0.700
ENSSARP00000001038	VPREB1	ENSSARP00000001038	ENSSARP00000011051	annotation not available	V-set pre-B cell surrogate light chain 1.	0.956
ENSSARP00000001472	ENSSARP00000000538	ENSSARP00000001472	ENSSARP00000000538	annotation not available	annotation not available	0.513
ENSSARP00000001472	ENSSARP00000001038	ENSSARP00000001472	ENSSARP00000001038	annotation not available	annotation not available	0.626
ENSSARP00000001472	ENSSARP00000001490	ENSSARP00000001472	ENSSARP00000001490	annotation not available	annotation not available	0.597
ENSSARP00000001472	ENSSARP00000003659	ENSSARP00000001472	ENSSARP00000003659	annotation not available	annotation not available	0.729
ENSSARP00000001472	ENSSARP00000007959	ENSSARP00000001472	ENSSARP00000007959	annotation not available	annotation not available	0.622
ENSSARP00000001472	ENSSARP00000009385	ENSSARP00000001472	ENSSARP00000009385	annotation not available	annotation not available	0.685
ENSSARP00000001472	JCHAIN	ENSSARP00000001472	ENSSARP00000007260	annotation not available	Joining chain of multimeric IgA and IgM.	0.659
ENSSARP00000001472	NTNG1	ENSSARP00000001472	ENSSARP00000002235	annotation not available	Netrin G1.	0.528
ENSSARP00000001472	TRAV19	ENSSARP00000001472	ENSSARP00000011425	annotation not available	T cell receptor alpha variable 19.	0.705
ENSSARP00000001472	VPREB1	ENSSARP00000001472	ENSSARP00000011051	annotation not available	V-set pre-B cell surrogate light chain 1.	0.760
ENSSARP00000001490	ENSSARP00000001472	ENSSARP00000001490	ENSSARP00000001472	annotation not available	annotation not available	0.597
ENSSARP00000001490	VPREB1	ENSSARP00000001490	ENSSARP00000011051	annotation not available	V-set pre-B cell surrogate light chain 1.	0.576
ENSSARP00000003659	ENSSARP00000001472	ENSSARP00000003659	ENSSARP00000001472	annotation not available	annotation not available	0.729