STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMC1C-X9-C motif containing 1. (106 aa)    
Predicted Functional Partners:
COA3
Cytochrome c oxidase assembly factor 3 homolog, mitochondrial.
   
 0.986
SMIM20
Small integral membrane protein 20.
   
 
 0.924
COA1
Cytochrome c oxidase assembly factor 1 homolog.
    
 0.905
COX17
Cytochrome c oxidase copper chaperone COX17.
   
 
 0.843
PUM1
Pumilio RNA binding family member 1.
    
   0.812
PUM2
Pumilio RNA binding family member 2.
    
   0.812
COA5
Cytochrome c oxidase assembly factor 5.
   
 
 0.797
AZI2
5-azacytidine induced 2.
      
 0.771
COX4I2
Cytochrome c oxidase subunit 4 isoform 2, mitochondrial.
    
 0.714
COX6B1
Cytochrome c oxidase subunit 6B1.
   
 0.693
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
Server load: very high (>100%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.