ENSSARP00000001488 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSSARP00000001488

annotation not available (212 aa)

Predicted Functional Partners:

MED18

0.999

MED29

0.998

MED30

0.998

MED4

0.998

MED15

0.998

MED19

0.998

MED6

0.998

ENSSARP00000005051

0.998

MED10

0.998

MED31

0.998

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000001488	ENSSARP00000005051	ENSSARP00000001488	ENSSARP00000005051	annotation not available	annotation not available	0.998
ENSSARP00000001488	MED10	ENSSARP00000001488	ENSSARP00000005675	annotation not available	Mediator of RNA polymerase II transcription subunit 10.	0.998
ENSSARP00000001488	MED15	ENSSARP00000001488	ENSSARP00000001875	annotation not available	Mediator complex subunit 15.	0.998
ENSSARP00000001488	MED18	ENSSARP00000001488	ENSSARP00000000104	annotation not available	Mediator complex subunit 18.	0.999
ENSSARP00000001488	MED19	ENSSARP00000001488	ENSSARP00000002288	annotation not available	Mediator complex subunit 19.	0.998
ENSSARP00000001488	MED29	ENSSARP00000001488	ENSSARP00000000755	annotation not available	Mediator complex subunit 29.	0.998
ENSSARP00000001488	MED30	ENSSARP00000001488	ENSSARP00000000794	annotation not available	Mediator complex subunit 30.	0.998
ENSSARP00000001488	MED31	ENSSARP00000001488	ENSSARP00000005913	annotation not available	Mediator complex subunit 31.	0.998
ENSSARP00000001488	MED4	ENSSARP00000001488	ENSSARP00000001328	annotation not available	Mediator complex subunit 4.	0.998
ENSSARP00000001488	MED6	ENSSARP00000001488	ENSSARP00000002323	annotation not available	Mediator complex subunit 6.	0.998
ENSSARP00000005051	ENSSARP00000001488	ENSSARP00000005051	ENSSARP00000001488	annotation not available	annotation not available	0.998
ENSSARP00000005051	MED10	ENSSARP00000005051	ENSSARP00000005675	annotation not available	Mediator of RNA polymerase II transcription subunit 10.	0.998
ENSSARP00000005051	MED15	ENSSARP00000005051	ENSSARP00000001875	annotation not available	Mediator complex subunit 15.	0.998
ENSSARP00000005051	MED18	ENSSARP00000005051	ENSSARP00000000104	annotation not available	Mediator complex subunit 18.	0.998
ENSSARP00000005051	MED19	ENSSARP00000005051	ENSSARP00000002288	annotation not available	Mediator complex subunit 19.	0.997
ENSSARP00000005051	MED29	ENSSARP00000005051	ENSSARP00000000755	annotation not available	Mediator complex subunit 29.	0.997
ENSSARP00000005051	MED30	ENSSARP00000005051	ENSSARP00000000794	annotation not available	Mediator complex subunit 30.	0.999
ENSSARP00000005051	MED31	ENSSARP00000005051	ENSSARP00000005913	annotation not available	Mediator complex subunit 31.	0.998
ENSSARP00000005051	MED4	ENSSARP00000005051	ENSSARP00000001328	annotation not available	Mediator complex subunit 4.	0.998
ENSSARP00000005051	MED6	ENSSARP00000005051	ENSSARP00000002323	annotation not available	Mediator complex subunit 6.	0.998