GABPA protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

GABPA

GA binding protein transcription factor subunit alpha. (453 aa)

Predicted Functional Partners:

GABPB1

0.998

ENSSARP00000006602

0.935

KEAP1

0.912

ATP5PF

0.879

ENSSARP00000007838

0.876

ENSSARP00000009515

0.876

GABPB2

0.841

ENSSARP00000004631

0.808

KLHL17

0.785

ENSSARP00000003990

0.781

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5PF	GABPA	ENSSARP00000000669	ENSSARP00000001505	ATP synthase peripheral stalk subunit F6.	GA binding protein transcription factor subunit alpha.	0.879
ENSSARP00000003990	GABPA	ENSSARP00000003990	ENSSARP00000001505	annotation not available	GA binding protein transcription factor subunit alpha.	0.781
ENSSARP00000004631	ENSSARP00000006602	ENSSARP00000004631	ENSSARP00000006602	annotation not available	annotation not available	0.944
ENSSARP00000004631	GABPA	ENSSARP00000004631	ENSSARP00000001505	annotation not available	GA binding protein transcription factor subunit alpha.	0.808
ENSSARP00000004631	GABPB1	ENSSARP00000004631	ENSSARP00000000458	annotation not available	GA binding protein transcription factor subunit beta 1.	0.942
ENSSARP00000006602	ENSSARP00000004631	ENSSARP00000006602	ENSSARP00000004631	annotation not available	annotation not available	0.944
ENSSARP00000006602	GABPA	ENSSARP00000006602	ENSSARP00000001505	annotation not available	GA binding protein transcription factor subunit alpha.	0.935
ENSSARP00000006602	GABPB1	ENSSARP00000006602	ENSSARP00000000458	annotation not available	GA binding protein transcription factor subunit beta 1.	0.946
ENSSARP00000007838	GABPA	ENSSARP00000007838	ENSSARP00000001505	annotation not available	GA binding protein transcription factor subunit alpha.	0.876
ENSSARP00000009515	GABPA	ENSSARP00000009515	ENSSARP00000001505	annotation not available	GA binding protein transcription factor subunit alpha.	0.876
GABPA	ATP5PF	ENSSARP00000001505	ENSSARP00000000669	GA binding protein transcription factor subunit alpha.	ATP synthase peripheral stalk subunit F6.	0.879
GABPA	ENSSARP00000003990	ENSSARP00000001505	ENSSARP00000003990	GA binding protein transcription factor subunit alpha.	annotation not available	0.781
GABPA	ENSSARP00000004631	ENSSARP00000001505	ENSSARP00000004631	GA binding protein transcription factor subunit alpha.	annotation not available	0.808
GABPA	ENSSARP00000006602	ENSSARP00000001505	ENSSARP00000006602	GA binding protein transcription factor subunit alpha.	annotation not available	0.935
GABPA	ENSSARP00000007838	ENSSARP00000001505	ENSSARP00000007838	GA binding protein transcription factor subunit alpha.	annotation not available	0.876
GABPA	ENSSARP00000009515	ENSSARP00000001505	ENSSARP00000009515	GA binding protein transcription factor subunit alpha.	annotation not available	0.876
GABPA	GABPB1	ENSSARP00000001505	ENSSARP00000000458	GA binding protein transcription factor subunit alpha.	GA binding protein transcription factor subunit beta 1.	0.998
GABPA	GABPB2	ENSSARP00000001505	ENSSARP00000002862	GA binding protein transcription factor subunit alpha.	GA binding protein transcription factor subunit beta 2.	0.841
GABPA	KEAP1	ENSSARP00000001505	ENSSARP00000001941	GA binding protein transcription factor subunit alpha.	Kelch like ECH associated protein 1.	0.912
GABPA	KLHL17	ENSSARP00000001505	ENSSARP00000012272	GA binding protein transcription factor subunit alpha.	Kelch like family member 17.	0.785