ZSWIM3 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZSWIM3

Zinc finger SWIM-type containing 3. (698 aa)

Predicted Functional Partners:

ARID4A

0.946

ARID4B

0.946

TRRAP

0.888

MEAF6

0.867

ENSSARP00000003022

0.823

SIN3A

0.803

ENSSARP00000013068

0.803

EPC2

0.798

EPC1

0.798

BRMS1

0.796

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSSARP00000006346	ENSSARP00000010804	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.870
ARID4A	BRMS1	ENSSARP00000006346	ENSSARP00000009215	AT-rich interaction domain 4A.	BRMS1 transcriptional repressor and anoikis regulator.	0.975
ARID4A	ENSSARP00000003022	ENSSARP00000006346	ENSSARP00000003022	AT-rich interaction domain 4A.	annotation not available	0.902
ARID4A	ENSSARP00000013068	ENSSARP00000006346	ENSSARP00000013068	AT-rich interaction domain 4A.	annotation not available	0.981
ARID4A	EPC1	ENSSARP00000006346	ENSSARP00000007994	AT-rich interaction domain 4A.	Enhancer of polycomb homolog 1.	0.840
ARID4A	EPC2	ENSSARP00000006346	ENSSARP00000000135	AT-rich interaction domain 4A.	Enhancer of polycomb homolog 2.	0.840
ARID4A	MEAF6	ENSSARP00000006346	ENSSARP00000007486	AT-rich interaction domain 4A.	MYST/Esa1 associated factor 6.	0.883
ARID4A	SIN3A	ENSSARP00000006346	ENSSARP00000004421	AT-rich interaction domain 4A.	SIN3 transcription regulator family member A.	0.981
ARID4A	TRRAP	ENSSARP00000006346	ENSSARP00000002426	AT-rich interaction domain 4A.	Transformation/transcription domain associated protein.	0.973
ARID4A	ZSWIM3	ENSSARP00000006346	ENSSARP00000001528	AT-rich interaction domain 4A.	Zinc finger SWIM-type containing 3.	0.946
ARID4B	ARID4A	ENSSARP00000010804	ENSSARP00000006346	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.870
ARID4B	BRMS1	ENSSARP00000010804	ENSSARP00000009215	AT-rich interaction domain 4B.	BRMS1 transcriptional repressor and anoikis regulator.	0.985
ARID4B	ENSSARP00000003022	ENSSARP00000010804	ENSSARP00000003022	AT-rich interaction domain 4B.	annotation not available	0.902
ARID4B	ENSSARP00000013068	ENSSARP00000010804	ENSSARP00000013068	AT-rich interaction domain 4B.	annotation not available	0.982
ARID4B	EPC1	ENSSARP00000010804	ENSSARP00000007994	AT-rich interaction domain 4B.	Enhancer of polycomb homolog 1.	0.856
ARID4B	EPC2	ENSSARP00000010804	ENSSARP00000000135	AT-rich interaction domain 4B.	Enhancer of polycomb homolog 2.	0.846
ARID4B	MEAF6	ENSSARP00000010804	ENSSARP00000007486	AT-rich interaction domain 4B.	MYST/Esa1 associated factor 6.	0.883
ARID4B	SIN3A	ENSSARP00000010804	ENSSARP00000004421	AT-rich interaction domain 4B.	SIN3 transcription regulator family member A.	0.982
ARID4B	TRRAP	ENSSARP00000010804	ENSSARP00000002426	AT-rich interaction domain 4B.	Transformation/transcription domain associated protein.	0.970
ARID4B	ZSWIM3	ENSSARP00000010804	ENSSARP00000001528	AT-rich interaction domain 4B.	Zinc finger SWIM-type containing 3.	0.946