RBM11 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RBM11

RNA binding motif protein 11. (236 aa)

Predicted Functional Partners:

ZCCHC8

0.943

MTREX

0.823

ENSSARP00000003305

0.813

ENSSARP00000001461

0.794

ENSSARP00000000565

0.720

WDR13

0.685

MCM3AP

0.664

ENSSARP00000009880

0.660

ENSSARP00000001463

0.647

ENSSARP00000004378

0.647

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000000565	ENSSARP00000009880	ENSSARP00000000565	ENSSARP00000009880	annotation not available	annotation not available	0.550
ENSSARP00000000565	MTREX	ENSSARP00000000565	ENSSARP00000007630	annotation not available	Mtr4 exosome RNA helicase.	0.522
ENSSARP00000000565	RBM11	ENSSARP00000000565	ENSSARP00000001562	annotation not available	RNA binding motif protein 11.	0.720
ENSSARP00000001461	ENSSARP00000009880	ENSSARP00000001461	ENSSARP00000009880	annotation not available	annotation not available	0.796
ENSSARP00000001461	MTREX	ENSSARP00000001461	ENSSARP00000007630	annotation not available	Mtr4 exosome RNA helicase.	0.724
ENSSARP00000001461	RBM11	ENSSARP00000001461	ENSSARP00000001562	annotation not available	RNA binding motif protein 11.	0.794
ENSSARP00000001461	ZCCHC8	ENSSARP00000001461	ENSSARP00000003621	annotation not available	Zinc finger CCHC-type containing 8.	0.978
ENSSARP00000001463	ENSSARP00000004378	ENSSARP00000001463	ENSSARP00000004378	annotation not available	annotation not available	0.774
ENSSARP00000001463	RBM11	ENSSARP00000001463	ENSSARP00000001562	annotation not available	RNA binding motif protein 11.	0.647
ENSSARP00000001463	ZCCHC8	ENSSARP00000001463	ENSSARP00000003621	annotation not available	Zinc finger CCHC-type containing 8.	0.559
ENSSARP00000003305	RBM11	ENSSARP00000003305	ENSSARP00000001562	annotation not available	RNA binding motif protein 11.	0.813
ENSSARP00000004378	ENSSARP00000001463	ENSSARP00000004378	ENSSARP00000001463	annotation not available	annotation not available	0.774
ENSSARP00000004378	RBM11	ENSSARP00000004378	ENSSARP00000001562	annotation not available	RNA binding motif protein 11.	0.647
ENSSARP00000009880	ENSSARP00000000565	ENSSARP00000009880	ENSSARP00000000565	annotation not available	annotation not available	0.550
ENSSARP00000009880	ENSSARP00000001461	ENSSARP00000009880	ENSSARP00000001461	annotation not available	annotation not available	0.796
ENSSARP00000009880	RBM11	ENSSARP00000009880	ENSSARP00000001562	annotation not available	RNA binding motif protein 11.	0.660
MCM3AP	RBM11	ENSSARP00000001305	ENSSARP00000001562	Minichromosome maintenance complex component 3 associated protein.	RNA binding motif protein 11.	0.664
MTREX	ENSSARP00000000565	ENSSARP00000007630	ENSSARP00000000565	Mtr4 exosome RNA helicase.	annotation not available	0.522
MTREX	ENSSARP00000001461	ENSSARP00000007630	ENSSARP00000001461	Mtr4 exosome RNA helicase.	annotation not available	0.724
MTREX	RBM11	ENSSARP00000007630	ENSSARP00000001562	Mtr4 exosome RNA helicase.	RNA binding motif protein 11.	0.823