TMEM245 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TMEM245

Transmembrane protein 245. (711 aa)

Predicted Functional Partners:

USP34

0.667

ENSSARP00000005058

0.578

GABPB1

0.570

TERF2IP

0.570

ENSSARP00000007543

0.569

ENSSARP00000012303

0.472

LYPD3

0.466

ENSSARP00000008736

0.450

ENSSARP00000003429

0.410

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000003429	ENSSARP00000008736	ENSSARP00000003429	ENSSARP00000008736	annotation not available	annotation not available	0.622
ENSSARP00000003429	TMEM245	ENSSARP00000003429	ENSSARP00000001574	annotation not available	Transmembrane protein 245.	0.410
ENSSARP00000005058	TMEM245	ENSSARP00000005058	ENSSARP00000001574	annotation not available	Transmembrane protein 245.	0.578
ENSSARP00000007543	TERF2IP	ENSSARP00000007543	ENSSARP00000010389	annotation not available	TERF2 interacting protein.	0.998
ENSSARP00000007543	TMEM245	ENSSARP00000007543	ENSSARP00000001574	annotation not available	Transmembrane protein 245.	0.569
ENSSARP00000008736	ENSSARP00000003429	ENSSARP00000008736	ENSSARP00000003429	annotation not available	annotation not available	0.622
ENSSARP00000008736	TMEM245	ENSSARP00000008736	ENSSARP00000001574	annotation not available	Transmembrane protein 245.	0.450
ENSSARP00000012303	TMEM245	ENSSARP00000012303	ENSSARP00000001574	annotation not available	Transmembrane protein 245.	0.472
GABPB1	TMEM245	ENSSARP00000000458	ENSSARP00000001574	GA binding protein transcription factor subunit beta 1.	Transmembrane protein 245.	0.570
LYPD3	TMEM245	ENSSARP00000000424	ENSSARP00000001574	LY6/PLAUR domain containing 3.	Transmembrane protein 245.	0.466
TERF2IP	ENSSARP00000007543	ENSSARP00000010389	ENSSARP00000007543	TERF2 interacting protein.	annotation not available	0.998
TERF2IP	TMEM245	ENSSARP00000010389	ENSSARP00000001574	TERF2 interacting protein.	Transmembrane protein 245.	0.570
TMEM245	ENSSARP00000003429	ENSSARP00000001574	ENSSARP00000003429	Transmembrane protein 245.	annotation not available	0.410
TMEM245	ENSSARP00000005058	ENSSARP00000001574	ENSSARP00000005058	Transmembrane protein 245.	annotation not available	0.578
TMEM245	ENSSARP00000007543	ENSSARP00000001574	ENSSARP00000007543	Transmembrane protein 245.	annotation not available	0.569
TMEM245	ENSSARP00000008736	ENSSARP00000001574	ENSSARP00000008736	Transmembrane protein 245.	annotation not available	0.450
TMEM245	ENSSARP00000012303	ENSSARP00000001574	ENSSARP00000012303	Transmembrane protein 245.	annotation not available	0.472
TMEM245	GABPB1	ENSSARP00000001574	ENSSARP00000000458	Transmembrane protein 245.	GA binding protein transcription factor subunit beta 1.	0.570
TMEM245	LYPD3	ENSSARP00000001574	ENSSARP00000000424	Transmembrane protein 245.	LY6/PLAUR domain containing 3.	0.466
TMEM245	TERF2IP	ENSSARP00000001574	ENSSARP00000010389	Transmembrane protein 245.	TERF2 interacting protein.	0.570