SGCZ protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SGCZ

Sarcoglycan zeta. (311 aa)

Predicted Functional Partners:

ENSSARP00000006097

0.999

SGCB

0.998

SGCG

0.998

SGCE

0.988

SNTG2

0.963

SNTG1

0.963

ENSSARP00000002588

0.946

DMD

0.946

SNTB1

0.940

SNTB2

0.940

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMD	ENSSARP00000006097	ENSSARP00000013091	ENSSARP00000006097	Dystrophin.	annotation not available	0.991
DMD	SGCB	ENSSARP00000013091	ENSSARP00000003422	Dystrophin.	Sarcoglycan beta.	0.919
DMD	SGCE	ENSSARP00000013091	ENSSARP00000002923	Dystrophin.	Sarcoglycan epsilon.	0.953
DMD	SGCG	ENSSARP00000013091	ENSSARP00000011321	Dystrophin.	Sarcoglycan gamma.	0.961
DMD	SGCZ	ENSSARP00000013091	ENSSARP00000001583	Dystrophin.	Sarcoglycan zeta.	0.946
DMD	SNTB1	ENSSARP00000013091	ENSSARP00000001156	Dystrophin.	Syntrophin beta 1.	0.988
DMD	SNTB2	ENSSARP00000013091	ENSSARP00000010406	Dystrophin.	Syntrophin beta 2.	0.986
DMD	SNTG1	ENSSARP00000013091	ENSSARP00000001937	Dystrophin.	Syntrophin gamma 1.	0.919
DMD	SNTG2	ENSSARP00000013091	ENSSARP00000001108	Dystrophin.	Syntrophin gamma 2.	0.943
ENSSARP00000002588	ENSSARP00000006097	ENSSARP00000002588	ENSSARP00000006097	annotation not available	annotation not available	0.991
ENSSARP00000002588	SGCB	ENSSARP00000002588	ENSSARP00000003422	annotation not available	Sarcoglycan beta.	0.919
ENSSARP00000002588	SGCE	ENSSARP00000002588	ENSSARP00000002923	annotation not available	Sarcoglycan epsilon.	0.953
ENSSARP00000002588	SGCG	ENSSARP00000002588	ENSSARP00000011321	annotation not available	Sarcoglycan gamma.	0.961
ENSSARP00000002588	SGCZ	ENSSARP00000002588	ENSSARP00000001583	annotation not available	Sarcoglycan zeta.	0.946
ENSSARP00000002588	SNTB1	ENSSARP00000002588	ENSSARP00000001156	annotation not available	Syntrophin beta 1.	0.988
ENSSARP00000002588	SNTB2	ENSSARP00000002588	ENSSARP00000010406	annotation not available	Syntrophin beta 2.	0.986
ENSSARP00000002588	SNTG1	ENSSARP00000002588	ENSSARP00000001937	annotation not available	Syntrophin gamma 1.	0.919
ENSSARP00000002588	SNTG2	ENSSARP00000002588	ENSSARP00000001108	annotation not available	Syntrophin gamma 2.	0.943
ENSSARP00000006097	DMD	ENSSARP00000006097	ENSSARP00000013091	annotation not available	Dystrophin.	0.991
ENSSARP00000006097	ENSSARP00000002588	ENSSARP00000006097	ENSSARP00000002588	annotation not available	annotation not available	0.991