OIT3 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

OIT3

Oncoprotein induced transcript 3. (548 aa)

Predicted Functional Partners:

MYSM1

0.809

ENSSARP00000008073

0.710

ARID4A

0.701

ARID4B

0.701

MCU

0.683

PGBD5

0.658

KATNA1

0.656

SLF1

0.652

ENSSARP00000006451

0.627

ENSSARP00000007374

0.619

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSSARP00000006346	ENSSARP00000010804	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.870
ARID4A	ENSSARP00000007374	ENSSARP00000006346	ENSSARP00000007374	AT-rich interaction domain 4A.	annotation not available	0.548
ARID4A	KATNA1	ENSSARP00000006346	ENSSARP00000007740	AT-rich interaction domain 4A.	Katanin catalytic subunit A1.	0.547
ARID4A	MYSM1	ENSSARP00000006346	ENSSARP00000002751	AT-rich interaction domain 4A.	Myb like, SWIRM and MPN domains 1.	0.850
ARID4A	OIT3	ENSSARP00000006346	ENSSARP00000001584	AT-rich interaction domain 4A.	Oncoprotein induced transcript 3.	0.701
ARID4B	ARID4A	ENSSARP00000010804	ENSSARP00000006346	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.870
ARID4B	ENSSARP00000007374	ENSSARP00000010804	ENSSARP00000007374	AT-rich interaction domain 4B.	annotation not available	0.559
ARID4B	KATNA1	ENSSARP00000010804	ENSSARP00000007740	AT-rich interaction domain 4B.	Katanin catalytic subunit A1.	0.499
ARID4B	MYSM1	ENSSARP00000010804	ENSSARP00000002751	AT-rich interaction domain 4B.	Myb like, SWIRM and MPN domains 1.	0.856
ARID4B	OIT3	ENSSARP00000010804	ENSSARP00000001584	AT-rich interaction domain 4B.	Oncoprotein induced transcript 3.	0.701
ENSSARP00000006451	OIT3	ENSSARP00000006451	ENSSARP00000001584	annotation not available	Oncoprotein induced transcript 3.	0.627
ENSSARP00000007374	ARID4A	ENSSARP00000007374	ENSSARP00000006346	annotation not available	AT-rich interaction domain 4A.	0.548
ENSSARP00000007374	ARID4B	ENSSARP00000007374	ENSSARP00000010804	annotation not available	AT-rich interaction domain 4B.	0.559
ENSSARP00000007374	MYSM1	ENSSARP00000007374	ENSSARP00000002751	annotation not available	Myb like, SWIRM and MPN domains 1.	0.614
ENSSARP00000007374	OIT3	ENSSARP00000007374	ENSSARP00000001584	annotation not available	Oncoprotein induced transcript 3.	0.619
ENSSARP00000007374	PGBD5	ENSSARP00000007374	ENSSARP00000011252	annotation not available	piggyBac transposable element derived 5.	0.581
ENSSARP00000007374	SLF1	ENSSARP00000007374	ENSSARP00000011693	annotation not available	SMC5-SMC6 complex localization factor 1.	0.695
ENSSARP00000008073	OIT3	ENSSARP00000008073	ENSSARP00000001584	annotation not available	Oncoprotein induced transcript 3.	0.710
KATNA1	ARID4A	ENSSARP00000007740	ENSSARP00000006346	Katanin catalytic subunit A1.	AT-rich interaction domain 4A.	0.547
KATNA1	ARID4B	ENSSARP00000007740	ENSSARP00000010804	Katanin catalytic subunit A1.	AT-rich interaction domain 4B.	0.499