CP protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CP

Ceruloplasmin. (1064 aa)

Predicted Functional Partners:

SLC40A1

0.955

HPX

0.871

ITIH1

0.861

ATP7B

0.813

ENSSARP00000008193

0.809

ENSSARP00000005598

0.808

ENSSARP00000008865

0.808

ENSSARP00000000868

0.806

ENSSARP00000010155

0.805

ENSSARP00000002551

0.766

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP7B	CP	ENSSARP00000006773	ENSSARP00000001591	ATPase copper transporting beta.	Ceruloplasmin.	0.813
CP	ATP7B	ENSSARP00000001591	ENSSARP00000006773	Ceruloplasmin.	ATPase copper transporting beta.	0.813
CP	ENSSARP00000000868	ENSSARP00000001591	ENSSARP00000000868	Ceruloplasmin.	annotation not available	0.806
CP	ENSSARP00000002551	ENSSARP00000001591	ENSSARP00000002551	Ceruloplasmin.	annotation not available	0.766
CP	ENSSARP00000005598	ENSSARP00000001591	ENSSARP00000005598	Ceruloplasmin.	annotation not available	0.808
CP	ENSSARP00000008193	ENSSARP00000001591	ENSSARP00000008193	Ceruloplasmin.	annotation not available	0.809
CP	ENSSARP00000008865	ENSSARP00000001591	ENSSARP00000008865	Ceruloplasmin.	annotation not available	0.808
CP	ENSSARP00000010155	ENSSARP00000001591	ENSSARP00000010155	Ceruloplasmin.	annotation not available	0.805
CP	HPX	ENSSARP00000001591	ENSSARP00000001005	Ceruloplasmin.	Hemopexin.	0.871
CP	ITIH1	ENSSARP00000001591	ENSSARP00000011179	Ceruloplasmin.	Inter-alpha-trypsin inhibitor heavy chain 1.	0.861
CP	SLC40A1	ENSSARP00000001591	ENSSARP00000009379	Ceruloplasmin.	Solute carrier family 40 member 1.	0.955
ENSSARP00000000868	CP	ENSSARP00000000868	ENSSARP00000001591	annotation not available	Ceruloplasmin.	0.806
ENSSARP00000000868	ENSSARP00000002551	ENSSARP00000000868	ENSSARP00000002551	annotation not available	annotation not available	0.938
ENSSARP00000000868	HPX	ENSSARP00000000868	ENSSARP00000001005	annotation not available	Hemopexin.	0.828
ENSSARP00000002551	CP	ENSSARP00000002551	ENSSARP00000001591	annotation not available	Ceruloplasmin.	0.766
ENSSARP00000002551	ENSSARP00000000868	ENSSARP00000002551	ENSSARP00000000868	annotation not available	annotation not available	0.938
ENSSARP00000002551	HPX	ENSSARP00000002551	ENSSARP00000001005	annotation not available	Hemopexin.	0.860
ENSSARP00000002551	ITIH1	ENSSARP00000002551	ENSSARP00000011179	annotation not available	Inter-alpha-trypsin inhibitor heavy chain 1.	0.515
ENSSARP00000005598	CP	ENSSARP00000005598	ENSSARP00000001591	annotation not available	Ceruloplasmin.	0.808
ENSSARP00000008193	CP	ENSSARP00000008193	ENSSARP00000001591	annotation not available	Ceruloplasmin.	0.809