STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL8A1Collagen type VIII alpha 1 chain. (740 aa)    
Predicted Functional Partners:
THBS4
Thrombospondin 4.
   
 0.761
COMP
Cartilage oligomeric matrix protein.
   
 0.670
LOC101545529
Keratin-associated protein 26-1-like.
    
  0.660
ENSSARP00000001999
annotation not available
   
 0.654
NID1
Nidogen 1.
    
 
 0.649
ENSSARP00000005139
annotation not available
    
 0.648
ENSSARP00000004845
annotation not available
    
 0.646
COL4A6
Collagen type IV alpha 6 chain.
   
 0.635
TGFBR1
Transforming growth factor beta receptor 1.
    
 
 0.629
ENSSARP00000004024
annotation not available
    
 
 0.627
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.