Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSARP00000001661annotation not available (1019 aa)    
Predicted Functional Partners:
LTV1
LTV1 ribosome biogenesis factor.
    
 0.864
RIOK2
RIO kinase 2.
   
 0.862
TSR1
TSR1 ribosome maturation factor.
    
 0.857
ENSSARP00000006343
annotation not available
    
 0.779
PER1
Period circadian regulator 1.
    
 0.743
TFB2M
Transcription factor B2, mitochondrial.
    
  0.727
DIMT1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
    
  0.727
RPS8
Ribosomal protein S8.
    
  0.714
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
    
  0.674
NUDCD2
NudC domain containing 2.
    
 
 0.666
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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