Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DTD2D-aminoacyl-tRNA deacylase 2. (168 aa)    
Predicted Functional Partners:
RBM42
RNA binding motif protein 42.
      
 0.778
ENSSARP00000011053
annotation not available
   
 
 0.698
ENSSARP00000004873
annotation not available
      
 0.651
PPP6C
Protein phosphatase 6 catalytic subunit.
   
   0.635
TARS1
threonyl-tRNA synthetase 1.
   
 
 0.627
NUBPL
Nucleotide binding protein like.
  
  
 0.626
ERP29
Endoplasmic reticulum protein 29.
      
 0.622
TMEM9B
TMEM9 domain family member B.
      
 0.621
CCDC85A
Coiled-coil domain containing 85A.
      
 0.572
SCFD1
Sec1 family domain containing 1.
      
 0.563
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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