UPK1A protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

UPK1A

Uroplakin 1A. (237 aa)

Predicted Functional Partners:

UPK2

0.989

ENSSARP00000012931

0.609

ENSSARP00000002977

0.588

CD53

0.555

ENSSARP00000006594

0.525

ENSSARP00000004279

0.516

ENSSARP00000000583

0.495

ENSSARP00000007835

0.487

ENSSARP00000004428

0.472

STEAP2

0.472

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD53	UPK1A	ENSSARP00000005007	ENSSARP00000001731	CD53 molecule.	Uroplakin 1A.	0.555
CD53	UPK2	ENSSARP00000005007	ENSSARP00000009959	CD53 molecule.	Uroplakin 2.	0.430
ENSSARP00000000583	ENSSARP00000004428	ENSSARP00000000583	ENSSARP00000004428	annotation not available	annotation not available	0.603
ENSSARP00000000583	UPK1A	ENSSARP00000000583	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.495
ENSSARP00000002977	UPK1A	ENSSARP00000002977	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.588
ENSSARP00000002977	UPK2	ENSSARP00000002977	ENSSARP00000009959	annotation not available	Uroplakin 2.	0.616
ENSSARP00000004279	UPK1A	ENSSARP00000004279	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.516
ENSSARP00000004428	ENSSARP00000000583	ENSSARP00000004428	ENSSARP00000000583	annotation not available	annotation not available	0.603
ENSSARP00000004428	UPK1A	ENSSARP00000004428	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.472
ENSSARP00000006594	UPK1A	ENSSARP00000006594	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.525
ENSSARP00000006594	UPK2	ENSSARP00000006594	ENSSARP00000009959	annotation not available	Uroplakin 2.	0.407
ENSSARP00000007835	UPK1A	ENSSARP00000007835	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.487
ENSSARP00000012931	UPK1A	ENSSARP00000012931	ENSSARP00000001731	annotation not available	Uroplakin 1A.	0.609
ENSSARP00000012931	UPK2	ENSSARP00000012931	ENSSARP00000009959	annotation not available	Uroplakin 2.	0.601
STEAP2	UPK1A	ENSSARP00000009883	ENSSARP00000001731	STEAP2 metalloreductase.	Uroplakin 1A.	0.472
STEAP2	UPK2	ENSSARP00000009883	ENSSARP00000009959	STEAP2 metalloreductase.	Uroplakin 2.	0.511
UPK1A	CD53	ENSSARP00000001731	ENSSARP00000005007	Uroplakin 1A.	CD53 molecule.	0.555
UPK1A	ENSSARP00000000583	ENSSARP00000001731	ENSSARP00000000583	Uroplakin 1A.	annotation not available	0.495
UPK1A	ENSSARP00000002977	ENSSARP00000001731	ENSSARP00000002977	Uroplakin 1A.	annotation not available	0.588
UPK1A	ENSSARP00000004279	ENSSARP00000001731	ENSSARP00000004279	Uroplakin 1A.	annotation not available	0.516