SERPINB5 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SERPINB5

Serpin family B member 5. (376 aa)

Predicted Functional Partners:

ENSSARP00000005350

0.753

VTN

0.698

CP

0.694

PLAU

0.674

ENSSARP00000001637

0.670

ENSSARP00000000837

0.665

SERPINE1

0.664

ENSSARP00000002653

0.660

ENSSARP00000006751

0.643

ENSSARP00000007320

0.641

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CP	ENSSARP00000005350	ENSSARP00000001591	ENSSARP00000005350	Ceruloplasmin.	annotation not available	0.641
CP	ENSSARP00000006751	ENSSARP00000001591	ENSSARP00000006751	Ceruloplasmin.	annotation not available	0.630
CP	SERPINB5	ENSSARP00000001591	ENSSARP00000001736	Ceruloplasmin.	Serpin family B member 5.	0.694
ENSSARP00000000837	SERPINB5	ENSSARP00000000837	ENSSARP00000001736	annotation not available	Serpin family B member 5.	0.665
ENSSARP00000001637	SERPINB5	ENSSARP00000001637	ENSSARP00000001736	annotation not available	Serpin family B member 5.	0.670
ENSSARP00000002653	SERPINB5	ENSSARP00000002653	ENSSARP00000001736	annotation not available	Serpin family B member 5.	0.660
ENSSARP00000005350	CP	ENSSARP00000005350	ENSSARP00000001591	annotation not available	Ceruloplasmin.	0.641
ENSSARP00000005350	ENSSARP00000006751	ENSSARP00000005350	ENSSARP00000006751	annotation not available	annotation not available	0.582
ENSSARP00000005350	PLAU	ENSSARP00000005350	ENSSARP00000006634	annotation not available	Plasminogen activator, urokinase.	0.573
ENSSARP00000005350	SERPINB5	ENSSARP00000005350	ENSSARP00000001736	annotation not available	Serpin family B member 5.	0.753
ENSSARP00000005350	SERPINE1	ENSSARP00000005350	ENSSARP00000002057	annotation not available	Serpin family E member 1.	0.715
ENSSARP00000005350	VTN	ENSSARP00000005350	ENSSARP00000010404	annotation not available	Vitronectin.	0.937
ENSSARP00000006751	CP	ENSSARP00000006751	ENSSARP00000001591	annotation not available	Ceruloplasmin.	0.630
ENSSARP00000006751	ENSSARP00000005350	ENSSARP00000006751	ENSSARP00000005350	annotation not available	annotation not available	0.582
ENSSARP00000006751	SERPINB5	ENSSARP00000006751	ENSSARP00000001736	annotation not available	Serpin family B member 5.	0.643
ENSSARP00000006751	VTN	ENSSARP00000006751	ENSSARP00000010404	annotation not available	Vitronectin.	0.589
ENSSARP00000007320	PLAU	ENSSARP00000007320	ENSSARP00000006634	annotation not available	Plasminogen activator, urokinase.	0.942
ENSSARP00000007320	SERPINB5	ENSSARP00000007320	ENSSARP00000001736	annotation not available	Serpin family B member 5.	0.641
ENSSARP00000007320	SERPINE1	ENSSARP00000007320	ENSSARP00000002057	annotation not available	Serpin family E member 1.	0.934
ENSSARP00000007320	VTN	ENSSARP00000007320	ENSSARP00000010404	annotation not available	Vitronectin.	0.938