SBF2 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SBF2

SET binding factor 2. (1846 aa)

Predicted Functional Partners:

MTMR2

0.992

ENSSARP00000012904

0.964

TCF20

0.901

RAB21

0.879

MTM1

0.855

ENSSARP00000000677

0.837

KMT2B

0.835

ENSSARP00000013142

0.835

ENSSARP00000010680

0.780

ENSSARP00000001278

0.766

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000000677	ENSSARP00000012904	ENSSARP00000000677	ENSSARP00000012904	annotation not available	annotation not available	0.617
ENSSARP00000000677	MTMR2	ENSSARP00000000677	ENSSARP00000002884	annotation not available	Myotubularin related protein 2.	0.879
ENSSARP00000000677	SBF2	ENSSARP00000000677	ENSSARP00000001744	annotation not available	SET binding factor 2.	0.837
ENSSARP00000001278	ENSSARP00000010680	ENSSARP00000001278	ENSSARP00000010680	annotation not available	annotation not available	0.710
ENSSARP00000001278	SBF2	ENSSARP00000001278	ENSSARP00000001744	annotation not available	SET binding factor 2.	0.766
ENSSARP00000001278	TCF20	ENSSARP00000001278	ENSSARP00000008487	annotation not available	Transcription factor 20.	0.761
ENSSARP00000010680	ENSSARP00000001278	ENSSARP00000010680	ENSSARP00000001278	annotation not available	annotation not available	0.710
ENSSARP00000010680	SBF2	ENSSARP00000010680	ENSSARP00000001744	annotation not available	SET binding factor 2.	0.780
ENSSARP00000010680	TCF20	ENSSARP00000010680	ENSSARP00000008487	annotation not available	Transcription factor 20.	0.799
ENSSARP00000012904	ENSSARP00000000677	ENSSARP00000012904	ENSSARP00000000677	annotation not available	annotation not available	0.617
ENSSARP00000012904	MTM1	ENSSARP00000012904	ENSSARP00000002446	annotation not available	Myotubularin 1.	0.856
ENSSARP00000012904	MTMR2	ENSSARP00000012904	ENSSARP00000002884	annotation not available	Myotubularin related protein 2.	0.900
ENSSARP00000012904	SBF2	ENSSARP00000012904	ENSSARP00000001744	annotation not available	SET binding factor 2.	0.964
ENSSARP00000013142	SBF2	ENSSARP00000013142	ENSSARP00000001744	annotation not available	SET binding factor 2.	0.835
KMT2B	SBF2	ENSSARP00000001796	ENSSARP00000001744	Lysine methyltransferase 2B.	SET binding factor 2.	0.835
MTM1	ENSSARP00000012904	ENSSARP00000002446	ENSSARP00000012904	Myotubularin 1.	annotation not available	0.856
MTM1	MTMR2	ENSSARP00000002446	ENSSARP00000002884	Myotubularin 1.	Myotubularin related protein 2.	0.945
MTM1	SBF2	ENSSARP00000002446	ENSSARP00000001744	Myotubularin 1.	SET binding factor 2.	0.855
MTMR2	ENSSARP00000000677	ENSSARP00000002884	ENSSARP00000000677	Myotubularin related protein 2.	annotation not available	0.879
MTMR2	ENSSARP00000012904	ENSSARP00000002884	ENSSARP00000012904	Myotubularin related protein 2.	annotation not available	0.900