PTER protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PTER

Phosphotriesterase related. (350 aa)

Predicted Functional Partners:

EXOC4

0.779

ENSSARP00000013119

0.775

ENSSARP00000006231

0.772

EXOC1

0.768

GDI2

0.741

ENSSARP00000011942

0.735

ENSSARP00000012189

0.731

ENSSARP00000002177

0.719

ENSSARP00000005021

0.713

VPS29

0.697

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000002177	ENSSARP00000005021	ENSSARP00000002177	ENSSARP00000005021	annotation not available	annotation not available	0.529
ENSSARP00000002177	ENSSARP00000006231	ENSSARP00000002177	ENSSARP00000006231	annotation not available	annotation not available	0.998
ENSSARP00000002177	ENSSARP00000012189	ENSSARP00000002177	ENSSARP00000012189	annotation not available	annotation not available	0.970
ENSSARP00000002177	ENSSARP00000013119	ENSSARP00000002177	ENSSARP00000013119	annotation not available	annotation not available	0.999
ENSSARP00000002177	EXOC1	ENSSARP00000002177	ENSSARP00000009979	annotation not available	Exocyst complex component 1.	0.998
ENSSARP00000002177	EXOC4	ENSSARP00000002177	ENSSARP00000006164	annotation not available	Exocyst complex component 4.	0.999
ENSSARP00000002177	GDI2	ENSSARP00000002177	ENSSARP00000005640	annotation not available	GDP dissociation inhibitor 2.	0.554
ENSSARP00000002177	PTER	ENSSARP00000002177	ENSSARP00000001746	annotation not available	Phosphotriesterase related.	0.719
ENSSARP00000005021	ENSSARP00000002177	ENSSARP00000005021	ENSSARP00000002177	annotation not available	annotation not available	0.529
ENSSARP00000005021	ENSSARP00000011942	ENSSARP00000005021	ENSSARP00000011942	annotation not available	annotation not available	0.990
ENSSARP00000005021	PTER	ENSSARP00000005021	ENSSARP00000001746	annotation not available	Phosphotriesterase related.	0.713
ENSSARP00000005021	VPS29	ENSSARP00000005021	ENSSARP00000000499	annotation not available	VPS29 retromer complex component.	0.996
ENSSARP00000006231	ENSSARP00000002177	ENSSARP00000006231	ENSSARP00000002177	annotation not available	annotation not available	0.998
ENSSARP00000006231	ENSSARP00000012189	ENSSARP00000006231	ENSSARP00000012189	annotation not available	annotation not available	0.965
ENSSARP00000006231	ENSSARP00000013119	ENSSARP00000006231	ENSSARP00000013119	annotation not available	annotation not available	0.999
ENSSARP00000006231	EXOC1	ENSSARP00000006231	ENSSARP00000009979	annotation not available	Exocyst complex component 1.	0.999
ENSSARP00000006231	EXOC4	ENSSARP00000006231	ENSSARP00000006164	annotation not available	Exocyst complex component 4.	0.999
ENSSARP00000006231	GDI2	ENSSARP00000006231	ENSSARP00000005640	annotation not available	GDP dissociation inhibitor 2.	0.586
ENSSARP00000006231	PTER	ENSSARP00000006231	ENSSARP00000001746	annotation not available	Phosphotriesterase related.	0.772
ENSSARP00000011942	ENSSARP00000005021	ENSSARP00000011942	ENSSARP00000005021	annotation not available	annotation not available	0.990