STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDNFBrain derived neurotrophic factor. (254 aa)    
Predicted Functional Partners:
NTRK2
Neurotrophic receptor tyrosine kinase 2.
   
 0.999
NTF4
Neurotrophin 4.
    
 0.991
SORT1
Sortilin 1.
    
 
 0.975
ENSSARP00000011021
annotation not available
   
 0.970
NGF
Nerve growth factor.
   
 0.949
NTF3
Neurotrophin 3.
   
 0.937
FRS2
Fibroblast growth factor receptor substrate 2.
     
 0.901
CNTF
Ciliary neurotrophic factor.
      
 0.897
MECP2
methyl-CpG binding protein 2.
    
 0.895
PXDN
Peroxidasin.
      
 0.879
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.