Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAXBP1PAX3 and PAX7 binding protein 1. (758 aa)    
Predicted Functional Partners:
TFIP11
Tuftelin interacting protein 11.
   
 0.986
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 0.978
ENSSARP00000004242
annotation not available
    
  0.977
DHX15
DEAH-box helicase 15.
   
  0.976
SYF2
SYF2 pre-mRNA splicing factor.
    
  0.974
ENSSARP00000006056
annotation not available
   
  0.973
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
  0.972
CWF19L1
CWF19 like cell cycle control factor 1.
    
  0.967
DDX23
DEAD-box helicase 23.
    
  0.948
ENSSARP00000000565
annotation not available
    
   0.944
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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