STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCO2Beta-carotene oxygenase 2. (572 aa)    
Predicted Functional Partners:
ASIP
Agouti signaling protein.
      
 0.732
TBC1D22B
TBC1 domain family member 22B.
      
 0.641
RARS1
arginyl-tRNA synthetase 1.
      
 0.632
PIBF1
Progesterone immunomodulatory binding factor 1.
      
 0.621
SLC45A2
Solute carrier family 45 member 2.
      
 0.608
ENSSARP00000000125
annotation not available
    
 0.592
PTS
6-pyruvoyltetrahydropterin synthase.
 
    
 0.592
TFE3
Transcription factor binding to IGHM enhancer 3.
      
 0.583
MITF
Melanocyte inducing transcription factor.
      
 0.583
TXNDC12
Thioredoxin domain containing 12.
    
 
 0.581
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.