PHAX protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

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[Homology]

Score

PHAX

Phosphorylated adaptor for RNA export. (270 aa)

Predicted Functional Partners:

NCBP1

0.996

NCBP2

0.995

NUCKS1

0.944

HUWE1

0.944

ENSSARP00000006464

0.924

ENSSARP00000012666

0.924

DDX20

0.893

ENSSARP00000000175

0.824

ENSSARP00000008222

0.812

SNUPN

0.805

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX20	ENSSARP00000008222	ENSSARP00000012270	ENSSARP00000008222	DEAD-box helicase 20.	annotation not available	0.824
DDX20	NCBP1	ENSSARP00000012270	ENSSARP00000006596	DEAD-box helicase 20.	Nuclear cap binding protein subunit 1.	0.552
DDX20	NCBP2	ENSSARP00000012270	ENSSARP00000012929	DEAD-box helicase 20.	Nuclear cap binding protein subunit 2.	0.496
DDX20	PHAX	ENSSARP00000012270	ENSSARP00000001778	DEAD-box helicase 20.	Phosphorylated adaptor for RNA export.	0.893
DDX20	SNUPN	ENSSARP00000012270	ENSSARP00000005055	DEAD-box helicase 20.	Snurportin 1.	0.845
ENSSARP00000000175	NCBP1	ENSSARP00000000175	ENSSARP00000006596	annotation not available	Nuclear cap binding protein subunit 1.	0.880
ENSSARP00000000175	NCBP2	ENSSARP00000000175	ENSSARP00000012929	annotation not available	Nuclear cap binding protein subunit 2.	0.882
ENSSARP00000000175	PHAX	ENSSARP00000000175	ENSSARP00000001778	annotation not available	Phosphorylated adaptor for RNA export.	0.824
ENSSARP00000006464	HUWE1	ENSSARP00000006464	ENSSARP00000009605	annotation not available	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.	0.684
ENSSARP00000006464	NCBP1	ENSSARP00000006464	ENSSARP00000006596	annotation not available	Nuclear cap binding protein subunit 1.	0.818
ENSSARP00000006464	NCBP2	ENSSARP00000006464	ENSSARP00000012929	annotation not available	Nuclear cap binding protein subunit 2.	0.902
ENSSARP00000006464	PHAX	ENSSARP00000006464	ENSSARP00000001778	annotation not available	Phosphorylated adaptor for RNA export.	0.924
ENSSARP00000006464	SNUPN	ENSSARP00000006464	ENSSARP00000005055	annotation not available	Snurportin 1.	0.982
ENSSARP00000008222	DDX20	ENSSARP00000008222	ENSSARP00000012270	annotation not available	DEAD-box helicase 20.	0.824
ENSSARP00000008222	NCBP2	ENSSARP00000008222	ENSSARP00000012929	annotation not available	Nuclear cap binding protein subunit 2.	0.932
ENSSARP00000008222	PHAX	ENSSARP00000008222	ENSSARP00000001778	annotation not available	Phosphorylated adaptor for RNA export.	0.812
ENSSARP00000008222	SNUPN	ENSSARP00000008222	ENSSARP00000005055	annotation not available	Snurportin 1.	0.666
ENSSARP00000012666	HUWE1	ENSSARP00000012666	ENSSARP00000009605	annotation not available	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.	0.684
ENSSARP00000012666	NCBP1	ENSSARP00000012666	ENSSARP00000006596	annotation not available	Nuclear cap binding protein subunit 1.	0.818
ENSSARP00000012666	NCBP2	ENSSARP00000012666	ENSSARP00000012929	annotation not available	Nuclear cap binding protein subunit 2.	0.902