SYNGR3 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SYNGR3

Synaptogyrin 3. (161 aa)

Predicted Functional Partners:

ENSSARP00000008193

0.831

ANKRD34B

0.641

SYP

0.639

SH3GLB2

0.586

ENSSARP00000003261

0.581

ITSN2

0.574

ENSSARP00000000188

0.567

SNAP25

0.533

ENSSARP00000007560

0.510

ENSSARP00000009668

0.510

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD34B	SYNGR3	ENSSARP00000003867	ENSSARP00000001791	Ankyrin repeat domain 34B.	Synaptogyrin 3.	0.641
ENSSARP00000000188	ITSN2	ENSSARP00000000188	ENSSARP00000006456	annotation not available	Intersectin 2.	0.872
ENSSARP00000000188	SNAP25	ENSSARP00000000188	ENSSARP00000006586	annotation not available	Synaptosome associated protein 25.	0.857
ENSSARP00000000188	SYNGR3	ENSSARP00000000188	ENSSARP00000001791	annotation not available	Synaptogyrin 3.	0.567
ENSSARP00000003261	ENSSARP00000007560	ENSSARP00000003261	ENSSARP00000007560	annotation not available	annotation not available	0.404
ENSSARP00000003261	ENSSARP00000008193	ENSSARP00000003261	ENSSARP00000008193	annotation not available	annotation not available	0.948
ENSSARP00000003261	ENSSARP00000009668	ENSSARP00000003261	ENSSARP00000009668	annotation not available	annotation not available	0.404
ENSSARP00000003261	SNAP25	ENSSARP00000003261	ENSSARP00000006586	annotation not available	Synaptosome associated protein 25.	0.580
ENSSARP00000003261	SYNGR3	ENSSARP00000003261	ENSSARP00000001791	annotation not available	Synaptogyrin 3.	0.581
ENSSARP00000003261	SYP	ENSSARP00000003261	ENSSARP00000002300	annotation not available	Synaptophysin.	0.837
ENSSARP00000007560	ENSSARP00000003261	ENSSARP00000007560	ENSSARP00000003261	annotation not available	annotation not available	0.404
ENSSARP00000007560	SNAP25	ENSSARP00000007560	ENSSARP00000006586	annotation not available	Synaptosome associated protein 25.	0.809
ENSSARP00000007560	SYNGR3	ENSSARP00000007560	ENSSARP00000001791	annotation not available	Synaptogyrin 3.	0.510
ENSSARP00000008193	ENSSARP00000003261	ENSSARP00000008193	ENSSARP00000003261	annotation not available	annotation not available	0.948
ENSSARP00000008193	SNAP25	ENSSARP00000008193	ENSSARP00000006586	annotation not available	Synaptosome associated protein 25.	0.626
ENSSARP00000008193	SYNGR3	ENSSARP00000008193	ENSSARP00000001791	annotation not available	Synaptogyrin 3.	0.831
ENSSARP00000008193	SYP	ENSSARP00000008193	ENSSARP00000002300	annotation not available	Synaptophysin.	0.495
ENSSARP00000009668	ENSSARP00000003261	ENSSARP00000009668	ENSSARP00000003261	annotation not available	annotation not available	0.404
ENSSARP00000009668	SNAP25	ENSSARP00000009668	ENSSARP00000006586	annotation not available	Synaptosome associated protein 25.	0.809
ENSSARP00000009668	SYNGR3	ENSSARP00000009668	ENSSARP00000001791	annotation not available	Synaptogyrin 3.	0.510