Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDZD8PDZ domain containing 8. (866 aa)    
Predicted Functional Partners:
ENSSARP00000010917
annotation not available
   
 0.808
ENSSARP00000000729
annotation not available
   
 0.804
ENSSARP00000008355
annotation not available
    
 
 0.682
ENSSARP00000005308
annotation not available
    
 
 0.662
VPS13A
Vacuolar protein sorting 13 homolog A.
      
 0.642
LNPK
Lunapark, ER junction formation factor.
      
 0.636
TOMM20L
Translocase of outer mitochondrial membrane 20 like.
     
 0.628
TOMM20
Translocase of outer mitochondrial membrane 20.
     
 0.628
ANKLE2
Ankyrin repeat and LEM domain containing 2.
    
 
 0.602
CSNK2A2
Casein kinase 2 alpha 2.
     
  0.593
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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